miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Pristionchus pacificus



ABOUT THIS RECORD

ID: MNEST038604
species: Pristionchus pacificus
source: miRBase, original name: ppc-mir-54 (MI0011198)

Taxonomy by NCBI:
Pristionchus pacificus Pristionchus Neodiplogasteridae Diplogasterida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
AACCCGTAATGATAATAATTCGCG

miRNA*
CGAGTTATTTCATTCGGGTCTA

mismatches: 2
bulges: 2

View larger
pre-miRNA
AGGTTAGCTGTATTCCTTCTCTACTGCCGTCCGAGTTATTTCATTCGGGTCTACCTATTGAGAGGCTAAACCCGTAATGATAATAATTCGCGCGGCTTGA
GGACGGATCAGCGAGTCTTG


dot-bracket secondary structure
((..(.((((...((((((((....(((((.(((((((((((((((((((.(((((......))).)).))))).))))).))))))))).)))))..))
))).))).)))).)..))..



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454

references

[1] de Wit E, Linsen SE, Cuppen E, Berezikov E, Genome Res. 19:2064-2074(2009)., "Repertoire and evolution of miRNA genes in four divergent nematode species"




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